PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19568
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 342aa    MW: 36815.4 Da    PI: 10.0058
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19568genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12206231227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt +C+ + ++G+C++G+rC+FaHg+
  PEQU_19568 206 KTDICCSWEEFGFCRFGSRCQFAHGK 231
                 99**********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-14200235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.58E-9203235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239204232IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5204231IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9206231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRGLSDSDET IVSLESSGAR SDIVKNARRR FSLSSPSPNA FLTPAFTAAA SAGGFSSNSP  60
LNIDSSLLRF KQSHLSRLRF SSSSSSSNDS PDSSSSSAAA VAARMQLQQL INPRSLSSSS  120
RRGSVNTPLS SIENLQSLLL SGRSSPAYLN YTTPMKFEIG DDVLVMDATV VSLPMPGRNR  180
QPLERISSSS SSSSVKNNPI DAKFLKTDIC CSWEEFGFCR FGSRCQFAHG KQELRGSPPP  240
WKLKPESGRE GSAVGSSADG DKYIRPEALD PAPAPPPAVC NSGSKKMKII KPEREPPVQK  300
PVPAFSWPPT KAEEAEIQKV LYGPGRRGRR LPVFVEVCSD SQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2944533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.25e-07C3H family protein